Several recent research projects are producing data that will inform the delineation of historic and contemporary Cisco spatial units ahead of an assessment requested by the Lake Michigan Technical Committee (anticipated 2026). This includes work to genotype historic...
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Genetics & Genomics
Supporting cisco rearing science: evaluating the effects of rearing temperature and long-term OTC mark retention
Reintroduction of Cisco (Coregonus artedi) from the Les Cheneaux Island region into Saginaw Bay began in 2018, when 1.1 million fall fingerlings (mean size ~ 75 mm total length, TL) were stocked after being reared at Jordan River National Fish Hatchery (JRNFH). In...
Evaluating the effects of tank color and environmental complexity on cisco phenotypes, coloration, and epigenomics
Captive rearing is an important component of restoration efforts for declining fish populations, including coregonines such as cisco (Coregonus artedi) in the Great Lakes. However, captive rearing often leads to unintended fitness and phenotypic effects on salmonids....
Surveying alternative cisco brood source collection sites in northern Lake Huron
The restoration of cisco (Coregonus artedi) in Lake Huron is a formal management objective of the Lake Huron Committee (LHC) of the Great Lakes Fishery Commission (GLFC) (DesJardine et al., 1995). In recent decades, Lake Huron has undergone significant food web...
Development of eDNA markers for Coregonids in the Great Lakes
The role of DNA methylation in morphological deformities in artificially reared cisco (Coregonus artedi)
We propose a pilot project to investigate the effects of artificial rearing on cisco DNA methylation. This project will build on an ongoing project funded in FY24 led by A. Honsey (“Effects of incubation temperature on survival, growth, morphology, and gene expression...
Genetic Monitoring of Bloater Broodstock using a GTSeq (Genotypes by thousands sequencing) Panel
Hatchery production is a central component of coregonine restoration within the Great Lakes ecosystem, and active supplementation programs are currently underway in Lakes Ontario and Huron. As the development of coregonine broodstock lines and methods associated with...
Describing historic Cisco population structure in Lake Michigan with scale samples from 1930-1974
The landscape of coregonine diversity in Lake Michigan has been vastly altered by more than a century of anthropogenic impacts. In addition to the extinction or extirpation of all but one deepwater cisco, shallow-water Cisco (Coregonus artedi) populations in Lake...
Expanding efforts to document and understand Great Lakes coregonine river spawning – Year 2
Restoration and conservation efforts hinge on the identification of key habitats, such as fish spawning habitats (Lewis et al. 1996; Kondolf 2000), and the potentially distinct populations that use them. Knowledge of these habitats can help to ensure that conservation...
Expanding efforts to document and understand Great Lakes coregonine river spawning
Our project team sampled five Great Lakes tributaries in fall 2022 and spring 2023 to assess evidence of tributary spawning by coregonines, such as cisco Coregonus artedi and lake whitefish C. clupeaformis. Specifically, we sampled the Chaumont River, Niagara River,...
Effects of incubation temperature on survival, growth, morphology, and gene expression of artificially reared cisco (Coregonus artedi): implications for best practices for captive propagation and restoration
A key tool for Great Lakes coregonine restoration is reintroduction via fish stocking. Stocking programs are currently underway, including efforts to restore cisco Coregonus artedi in Saginaw Bay, Lake Huron (Lake Huron Technical Committee 2007; Riley and Ebener 2020)...
Developing a high throughput method to genotype coregonines at a standardized panel of loci for genetic monitoring and parentage-based tagging applications
A central component of coregonine restoration in the Great Lakes is hatchery production, and active supplementation programs are underway in Lakes Ontario and Huron. Importantly, these efforts must consider the decades of work in other salmonids that demonstrate...
Examining the potential for unrepresentative sampling during cisco Coregonus artedi gamete collections for the Saginaw Bay restoration effort
Great Lakes cisco populations declined during the 19th and 20th centuries due to factors such as overfishing, habitat degradation, and interactions with invasive species (Van Oosten 1930; Crowder 1980; Myers et al. 2009; George 2019). Cisco are now considered...
Detection of Lake Erie Cisco using eDNA – Applications to Cisco Restoration in the Laurentian Great Lakes
Understanding extant diversity in compromised and healthy ecosystems is important to maintaining or restoring species diversity. Cisco (Coregonus artedi) and other coregonines were once found in all five Great Lakes and were central to Great Lakes food webs. The loss...
Examining the potential for unrepresentative sampling during cisco Coregonus artedi gamete collections for the Saginaw Bay restoration effort – Year 2
The cisco Coregonus artedi restoration effort in Saginaw Bay utilizes gametes sourced from northern Lake Huron, in the Les Cheneaux Islands and Drummond Island region (LHTC 2007). Gametes have been collected from bays in the Les Cheneaux area and Whitney Bay (Drummond...
A coordinated approach to monitoring of a coregonine brood and cultured progeny in the R3 FWS hatchery program
Broodstock management and monitoring programs are vital components of all types of stocking initiatives (e.g. Captive, Supportive, restorative, rescue). Broodstock collection and development should aim to preserve genetic diversity and minimize inbreeding and stocking...
Developing a coordinated approach to monitoring of coregonine brood and cultured progeny in the R3 FWS Hatchery Program
Enhancing Kiyi (Coregonus kiyi) research to support the conservation and restoration of deep-water coregonine diversity in the Laurentian Great Lakes
The abundance of the deepwater preyfish Kiyi (Coregonus kiyi) in Lake Superior makes it a high-value target for restoring extirpated populations in Lakes Michigan, Huron, and Ontario. Managers from several Great Lakes have informally indicated strong interest in...
Resolving the cisco complex of Lake Superior using morphological and genetic tools
Here we seek additional funding to follow-up a previous GLRI-funded project, “Morphologic, geographic and genetic variation among Lake Superior ciscoes.” Our goal was to conduct a comprehensive description of the morphological and genetic diversity of the Lake...
Establishing genetic baselines for historic coregonine diversity in Lake Superior
New research surveying morphological and genetic data across contemporary diversity in the cisco species complex has highlighted critical gaps in our understanding of the historic deepwater diversity in Lake Superior. Historic ciscoe diversity in Lake Superior, which...
Morphological and genomic assessment of putative hybridization among deepwater ciscoes and between deepwater ciscoes and typical artedi in Lakes Michigan and Huron – Year 2
Although species diversity can be lost through hybridization (Mallet 2005; Seehausen 2006) and hybridization has been common among ciscoes (genus Coregonus, subgenus Leucichthys; Smith 1964; Todd and Stedman 1989; Eshenroder et al. 2016; Ackiss et al. 2020), the...
Resolving taxonomy of the cisco (Coregonus) species complex in the Laurentian Great Lakes and Lake Nipigon
The manager endorsed Coregonine Restoration Framework (CRF) identified a need for reviewing and updating the taxonomy of ciscoes, and this task was assigned to the first of four science teams established in the Planning Phase of the CRF. The ‘Resolve cisco taxonomy’...
Morphological and genomic assessment of putative hybridization among deepwater ciscoes and between deepwater ciscoes and typical artedi in Lakes Michigan and Huron
Species diversity can be lost through a combination of demographic decline and hybridization (Mallet 2005; Seehausen 2006). Regarding diversity losses among Ciscoes (subgenus Leucichthys, genus Coregonus) across the Great Lakes, the demographic decline in the 20th...
Development of a genetic map for cisco and bloater
We constructed a linkage map for cisco (Coregonus artedi), an economically and culturally important fish in the Great Lakes and across North America, which previously lacked a high-density haploid linkage map. We used diploid and haploid cisco from northern Lake Huron...
Morphologic, geographic and genetic variation among Lake Superior ciscoes
The Laurentian Great Lakes once contained a diverse endemic cisco complex, but a series of factors resulted in declines in diversity and now Lake Superior is the only Great Lake with a relatively intact cisco complex. Although the large, pelagic cisco, Coregonus...